PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040535
Common NameLOC102585472
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 198aa    MW: 21550.6 Da    PI: 10.4196
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040535genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-193266135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  PGSC0003DMP400040535 32 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 66
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-142676IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4922662IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-122766No hitNo description
CDDcd002025.64E-123166No hitNo description
Gene3DG3DSA:3.30.50.108.2E-153165IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003208.2E-173266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVDLSDKQGL GSEEMSSGVT SPETSQSNVK TCADCGTTKT PLWRGGPAGP KSLCNACGIK  60
SRKKRRAFLG LNNEEKKSKK SVALGHKNHE AQHHLNQSCS SSSNSEDSKS SNFVKNIVSS  120
SLKKKLLPFG KEEVIMQRPR SRSTQKRKLG EVEQAAFLLM ALSCGSFYTQ GRMKMDKERK  180
NEKCCTLGSK SSTLWVG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040535
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345972.11e-143PREDICTED: GATA transcription factor 15-like isoform X1
RefseqXP_006345973.11e-143PREDICTED: GATA transcription factor 15-like isoform X2
TrEMBLM1C5G61e-141M1C5G6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602411e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-32GATA transcription factor 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]