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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 214aa MW: 24898.6 Da PI: 8.419 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.7 | 1.8e-26 | 111 | 170 | 1 | 59 |
---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+++ + r+YY+C+ +gC+vkk+ver+ +d +++++tYeg+Hnhe PGSC0003DMP400040153 111 LDDGYKWRKYGKKKVKSNTnYLRNYYKCSIRGCEVKKRVERDGHDSSYLITTYEGKHNHE 170 59**************885268*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-28 | 99 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-23 | 105 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.224 | 106 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-29 | 111 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-21 | 112 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTNQNFSYNY QDNFLDQDFE FSSFLDHLLV DYVPTYNNSN NTPLSEINPS MHEISSSSAN 60 SASSTTSFYA TPPNINHLKE KSKVGIIKKE MIKKNERHVI AFSTKTQLEI LDDGYKWRKY 120 GKKKVKSNTN YLRNYYKCSI RGCEVKKRVE RDGHDSSYLI TTYEGKHNHE INSSIIYNHV 180 EADSEFELNF HRRGGKRVER DHGHDSSCVH YYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-23 | 100 | 171 | 3 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040153 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-90 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060567.1 | 1e-116 | probable WRKY transcription factor 51 | ||||
TrEMBL | M1C4K4 | 1e-156 | M1C4K4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400059673 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14192 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 3e-22 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040153 |
Publications ? help Back to Top | |||
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