PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039421
Common NameLOC102601538
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 375aa    MW: 40247.2 Da    PI: 8.2691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039421genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.85.7e-36691751108
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                           aa+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++  +++ +  +s++ s+
  PGSC0003DMP400039421  69 AAPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSPASN 157
                           689**************************************************************777774443333333333333333 PP

                   TCP  89 kaaksaakskksqksaasal 108
                           ++  +++++k+++ks++  +
  PGSC0003DMP400039421 158 REIDENNPQKRRRKSSN--S 175
                           33333333333333333..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-2975172IPR005333Transcription factor, TCP
PROSITE profilePS5136925.58476130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSSFHDPDDD CGTSELSNDV AGDLNDRKMD GDGVADEKKL VFSAMKEEPF DSDHHTLVPS  60
MPMPVATTAA PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL  120
EHAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNREI DENNPQKRRR KSSNSEFIDV  180
GSLNRNAANV SQFAPVTTTP ATIPAAAAAP PPGLLPIWTM SNGGMMVPSN AIWMIPATVP  240
PVNVTNNNNV MVQYPQLWTP VFNLATRPIS SFVAAPTAAA TNNISGPPPI MMAGPLTIND  300
GAATSTGPKI GSNKSSMAPA SLSSSTDRNN NNKNDKPHML RDFSLEIYDR KELQFMSRSG  360
NHQQEPQVTS SKRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358853.10.0PREDICTED: transcription factor TCP9-like
TrEMBLM1C2U00.0M1C2U0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000585340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.26e-60TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]