PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038957
Common NameLOC102600805
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 448aa    MW: 48052.1 Da    PI: 5.688
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038957genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.22.8e-3490191197
                DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 
                           klfqrlw++eDei lL+G++++++++g      + + d++afye++k++ +++++k+qlveK+rrLKkK+++ v+k+ sgk+++f+++h
  PGSC0003DMP400038957  90 KLFQRLWTDEDEIELLRGFLEYTTQRGLntsspQHHYDTTAFYEQIKSKFQLDFNKNQLVEKLRRLKKKYRTVVSKMGSGKDFVFKSAH 178
                           579************************9776433445**************************************************** PP

                DUF573  85 dqkifelskkiWg 97 
                           dq +f++s++iW 
  PGSC0003DMP400038957 179 DQVTFDISHRIWS 191
                           ************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-3392191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDSVPNRHHQ ASYDNLDYEV DMELEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG  60
KRPRIDDFAI PVILPGAVKK PSAAFDESRK LFQRLWTDED EIELLRGFLE YTTQRGLNTS  120
SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ  180
VTFDISHRIW STGGSYARSS PGGSVGFSAP PLEDGGVGLG LEDDEDVNPN PNPDSIVLYH  240
SPKFNLNSNP NGIAIKTPRS QKRSPVPLEA VKVEHQPYQP PGVRINVQMP ATNSNPVAAA  300
PAAPPVSGVA APQVSGVAAP PVAGVAASAP TTVAASVPNL IEETVRNCVS PIFKELVNNV  360
ANLNGSARGF GFGFGGMGMS PIPLGLGQGL GLGLGFGGGA MSMEMMGDEK WRKQQMLELE  420
VYSKRLELVQ DQVKAQLEEL RSMGSNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038957
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347802.10.0PREDICTED: uncharacterized protein LOC102600805 isoform X1
TrEMBLM1C1T30.0M1C1T3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-45DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]