PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038950 | ||||||||
Common Name | LOC107060702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17329.9 Da PI: 10.2627 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.7e-15 | 11 | 59 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i k+ r v fskRr+g++KKAeEL L+ v i+fs+ ++ y+y PGSC0003DMP400038950 11 KKITKKTARMVAFSKRRKGLFKKAEELESLTSSHVTSIVFSPFDRPYTY 59 67999*************************************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-17 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.89 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-18 | 4 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-13 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-19 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.32E-13 | 19 | 60 | No hit | No description |
PRINTS | PR00404 | 3.0E-13 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-13 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGTGKKKIEI KKITKKTARM VAFSKRRKGL FKKAEELESL TSSHVTSIVF SPFDRPYTYG 60 DVNSVIKRHF PSCIRPEMST PVMNSHHSSS DVFGESSGSK LSSAPKGNGL RSWVEDIDVE 120 GCQNLNQLLM LKEQLEGTRK KIVSTDSESF QALFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038950 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-143 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164374.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL23 | ||||
TrEMBL | M1C1S6 | 1e-110 | M1C1S6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057853 | 1e-111 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 4e-12 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038950 |
Entrez Gene | 107060702 |
Publications ? help Back to Top | |||
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