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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18221.7 Da PI: 7.3879 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.3 | 2.7e-15 | 4 | 45 | 7 | 48 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + r vtfskRr+g++KKA+EL +++ +va ++fs+tg+ y+ PGSC0003DMP400038946 4 TSRMVTFSKRRKGLFKKAKELESMTGSRVASVVFSPTGRPYT 45 789***********************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-8 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.105 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.49E-17 | 1 | 45 | No hit | No description |
Pfam | PF00319 | 7.7E-20 | 2 | 45 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-14 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 12 | 27 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 27 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKETSRMVTF SKRRKGLFKK AKELESMTGS RVASVVFSPT GRPYTCGDVN SAIKQHFSTE 60 LLTSDCGDIN FAIKPHFAST RCMELLTSGL NSHDSDDVVF DVSLGSKSSS TPKRNGLRCW 120 VEGIDVEQYQ NLNQLLMLKQ QLEGTREKIA SIEELESFEA LFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038946 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 5e-71 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081723.1 | 3e-69 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1C1S3 | 1e-118 | M1C1S3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057844 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-14 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038946 |
Publications ? help Back to Top | |||
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