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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400038288 |
| Common Name | LOC102590506 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
C2H2 |
| Protein Properties |
Length: 340aa MW: 37518.1 Da PI: 6.5748 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400038288 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.4 | 0.001 | 45 | 65 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C C+k Fs+ L H+r H
PGSC0003DMP400038288 45 CRVCKKGFSSGKALGGHMRIH 65
*******************99 PP
|
| 2 | zf-C2H2 | 19.5 | 2.6e-06 | 96 | 116 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F++ +L H+r+H
PGSC0003DMP400038288 96 CKVCGKIFPSMKSLFGHMRSH 116
********************9 PP
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| 3 | zf-C2H2 | 15.6 | 4.6e-05 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ CgksF ++ L H ++H
PGSC0003DMP400038288 256 FKCNTCGKSFATHQALGGHKSSH 278
89**************9999988 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 2.17E-5 | 40 | 68 | No hit | No description |
| Pfam | PF13912 | 1.7E-7 | 43 | 65 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.43 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.494 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 45 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0076 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.349 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 6.7E-8 | 95 | 118 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 4.78E-10 | 95 | 116 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 4.78E-10 | 251 | 278 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 255 | 279 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.614 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.5E-8 | 256 | 279 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.029 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGTLWINQIS EKEVLGDDKD VMEFGDEDED EIIPKDNDDN KKRICRVCKK GFSSGKALGG 60
HMRIHVQSSK KEKSKPRGEE QVDVENCNND QLVPICKVCG KIFPSMKSLF GHMRSHPERA 120
WRGILPPHLK SSDEIGAKKT ASATTTVPGW SVTAKRGRKP NAEDDEQLQD AVHHLMLLAN 180
GDSIESGVTG HDTLEELEKT NSNYSLTSKA ENEEFVAQLE IIDNRKRRKK KKTKLRHLNS 240
VQDSPASVTA ATPEKFKCNT CGKSFATHQA LGGHKSSHNK LRIVIEDSNV AAISEEAAAS 300
SSKLLADGGR IVDFDLNELP SDHEDELAGN PDYFPFFSI*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 225 | 231 | KRRKKKK |
| 2 | 226 | 231 | RRKKKK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC240359 | 0.0 | AC240359.1 Solanum tuberosum chromosome 7 clone RHPOTKEY169K08, complete sequence. |
