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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400037848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 415aa MW: 46814.1 Da PI: 6.3772 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 278.7 | 1.7e-85 | 43 | 412 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl....f 84 v lLl Ae++++++l +a++lL+ + + ++g+p+qR++ yf+e L++r+ + +++++ + + + + ++e+l+ ++ PGSC0003DMP400037848 43 VLLLLVSAEMLANRQLDCARKLLNLCINFSLSAGNPVQRAVYYFAESLRKRIDKgiGIPTIASNIDTVNPN--IMEEVLMDPRTdvieT 129 5689999**********************************************954456666666555555..4555555555555678 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeel 172 ++ P+ k++++t qaIl++v++ +r+H iD++i+ G QW L+qaL e pp +l+iT+vg s ++++e+g+rL++fA++l PGSC0003DMP400037848 130 EQMLPFRKVTQFTGIQAILDSVKSFKRIHLIDLGIKTGSQWTILMQALVGNGECPPeHLKITAVGT----SLTRMQEVGNRLTSFADTL 214 9************************************************87765555*********....9****************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 ++pf+f++ v+++l ++ + ++ k gE++a+ + +l +ll+ + +les ++++ ksl P v+vv+e ea++n++ F +rf eal PGSC0003DMP400037848 215 HIPFSFKT-VVSDLRHIRKDLFESKAGEVVAIYSDSRLWTLLAWPNHLES----LIQVCKSLDPCVMVVTEIEANTNTPIFIDRFNEAL 298 ********.7999*****************************77777777....*********************************** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy. 349 yysa+fdsle+ ++ +++ r++ +++gr i+nv++ eg+e +rhe+l++Wr+ +e++G ++ +ls++ qakll +k +g+ PGSC0003DMP400037848 299 FYYSAIFDSLETCIGWNHQYRAVAQGVYIGRIIENVITSEGEEMAHRHEKLGSWRALFERFGIEETELSHSSLYQAKLLAEKSTCHGFc 387 ************************************************************************************99963 PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 ++e + +sl++ Wk+ p+ s+SaW+ PGSC0003DMP400037848 388 SLEMDGKSLIIKWKGTPIKSLSAWK 412 7889999999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.489 | 16 | 391 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-83 | 43 | 412 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MKIAKEQLKL YTSQNHDAYS IIFSPLIEDL GLSPQVTEEV ELVLLLLVSA EMLANRQLDC 60 ARKLLNLCIN FSLSAGNPVQ RAVYYFAESL RKRIDKGIGI PTIASNIDTV NPNIMEEVLM 120 DPRTDVIETE QMLPFRKVTQ FTGIQAILDS VKSFKRIHLI DLGIKTGSQW TILMQALVGN 180 GECPPEHLKI TAVGTSLTRM QEVGNRLTSF ADTLHIPFSF KTVVSDLRHI RKDLFESKAG 240 EVVAIYSDSR LWTLLAWPNH LESLIQVCKS LDPCVMVVTE IEANTNTPIF IDRFNEALFY 300 YSAIFDSLET CIGWNHQYRA VAQGVYIGRI IENVITSEGE EMAHRHEKLG SWRALFERFG 360 IEETELSHSS LYQAKLLAEK STCHGFCSLE MDGKSLIIKW KGTPIKSLSA WKFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-40 | 75 | 412 | 36 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400037848 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238908 | 0.0 | AC238908.8 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126f9 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358212.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
TrEMBL | M1BZ60 | 0.0 | M1BZ60_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056232 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-58 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400037848 |
Publications ? help Back to Top | |||
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