PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037700
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 358aa    MW: 40329.4 Da    PI: 6.1764
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037700genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK63.63.3e-20266316252
                RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           +k ++++d + y +l+i++A  +L+vc+Tv+Kr CR+ G++RWP+Rki+s+
  PGSC0003DMP400037700 266 TKLMNVKDFEDYLHLSIQEAGIKLNVCPTVMKRVCRRDGLRRWPSRKINSI 316
                           56788999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.619256336IPR003035RWP-RK domain
PfamPF020425.7E-18269316IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MQRLLTSSSP PAPSTYKYSN LCSSSLFSLL FQPICGAAWC MPSVVAYIMD NFNTSIVPYH  60
DPFDDNILTG LSLSLFDDEN PTIDDDNNYQ GPIYENYPTI VQGPIYENTT NLNSDGLRVP  120
DYDSYSDSFL LEISFESGNR FVGNSTNSEG EVPGKNNCQI LREITHGNGT ILSKLGIFGT  180
IGRISHASLE KSTMDNHVST DTIDIRKVKQ FLIQYFEGCK KDGYIVIEDT LSEFYQTLSV  240
HSGDRTNDIN NLLQLSPTTS QQRRRTKLMN VKDFEDYLHL SIQEAGIKLN VCPTVMKRVC  300
RRDGLRRWPS RKINSIKRKI SKRQESLSSI HAGERKSAKA DITKLEKELA DIFETIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754475e-73HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070645.11e-167uncharacterized protein LOC109120851
TrEMBLM1BYU10.0M1BYU1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.15e-08Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]