PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037417
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 380aa    MW: 42573.5 Da    PI: 4.5786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037417genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86e-1618105196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k ++ps+v+   +l++pkkf++ h ++k+    ++l de+ ++   k+ ++k++    l++GW++F  a++L egD++vF+l++ s+
  PGSC0003DMP400037417  18 FVKYMLPSHVSGGFWLSFPKKFCDCH-LPKHD-DIVVLVDENDEESPTKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPSK 100
                           8999*******************555.56544.4899*************889998....*************************9898 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                           f  +v +
  PGSC0003DMP400037417 101 F--KVFI 105
                           8..5544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-2513109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2014110IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-2616107No hitNo description
PfamPF023625.5E-1418106IPR003340B3 DNA binding domain
PROSITE profilePS5086311.22318109IPR003340B3 DNA binding domain
SMARTSM010191.6E-2018109IPR003340B3 DNA binding domain
PfamPF052665.4E-8257366IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLRAAEVQAN LPCQFPSFVK YMLPSHVSGG FWLSFPKKFC DCHLPKHDDI VVLVDENDEE  60
SPTKYLIDKN GLSGGWRGFS IAHNLLEGDV LVFQLIQPSK FKVFIIRENC LTEIDGAITL  120
LNLDSRARPI KSDHDEEMQI CEAKEEKYLE PPILDINQDD NIEEAMLLPN SDNNPVADQC  180
GNDSDNGSEV LEGIRFSESR IEFKDVKDYS GFSILVDGLI IDSEVPALHI RTKYYDLCRT  240
ENSFLHDHLL PGLNVKLAAG MITETVNIAD AIRACTSSTP RDCLETWDST LKGFECLGMN  300
VGFLRARISK LDSLSSESKN VLASKKVELA EAKEEMRILD EKVLKVKEVI KNVESEIEAL  360
TKKEANFEPK FKALATSPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037417
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077156.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM1BY600.0M1BY60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000555710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-40B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]