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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400037417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 380aa MW: 42573.5 Da PI: 4.5786 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6e-16 | 18 | 105 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k ++ps+v+ +l++pkkf++ h ++k+ ++l de+ ++ k+ ++k++ l++GW++F a++L egD++vF+l++ s+ PGSC0003DMP400037417 18 FVKYMLPSHVSGGFWLSFPKKFCDCH-LPKHD-DIVVLVDENDEESPTKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPSK 100 8999*******************555.56544.4899*************889998....*************************9898 PP E..EEEE CS B3 90 felvvkv 96 f +v + PGSC0003DMP400037417 101 F--KVFI 105 8..5544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-25 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 14 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.65E-26 | 16 | 107 | No hit | No description |
Pfam | PF02362 | 5.5E-14 | 18 | 106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.223 | 18 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 5.4E-8 | 257 | 366 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MLRAAEVQAN LPCQFPSFVK YMLPSHVSGG FWLSFPKKFC DCHLPKHDDI VVLVDENDEE 60 SPTKYLIDKN GLSGGWRGFS IAHNLLEGDV LVFQLIQPSK FKVFIIRENC LTEIDGAITL 120 LNLDSRARPI KSDHDEEMQI CEAKEEKYLE PPILDINQDD NIEEAMLLPN SDNNPVADQC 180 GNDSDNGSEV LEGIRFSESR IEFKDVKDYS GFSILVDGLI IDSEVPALHI RTKYYDLCRT 240 ENSFLHDHLL PGLNVKLAAG MITETVNIAD AIRACTSSTP RDCLETWDST LKGFECLGMN 300 VGFLRARISK LDSLSSESKN VLASKKVELA EAKEEMRILD EKVLKVKEVI KNVESEIEAL 360 TKKEANFEPK FKALATSPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400037417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077156.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | M1BY60 | 0.0 | M1BY60_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055571 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3023 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400037417 |
Publications ? help Back to Top | |||
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