PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037131
Common NameLOC102581277
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29695.6 Da    PI: 8.4715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037131genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18121175256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tk q   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  PGSC0003DMP400037131 121 RKKLRLTKAQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 175
                           788899***********************************************98 PP
2HD-ZIP_I/II123.88.3e-40121210191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ 
  PGSC0003DMP400037131 121 RKKLRLTKAQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELHELK- 208
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  PGSC0003DMP400037131 209 AL 210
                           44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-18109178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-17111171IPR009057Homeodomain-like
PROSITE profilePS5007117.394117177IPR001356Homeobox domain
SMARTSM003891.4E-15119181IPR001356Homeobox domain
PfamPF000467.0E-16121175IPR001356Homeobox domain
CDDcd000863.72E-16121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
SMARTSM003404.1E-24177220IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-10177211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGFDDICNTG LVLGLGFSST ADYKSKKITT PLVGKGPSLG LEPSLTLSLI SGDRTYEQQP  60
IKISKDHQSA DLYRQDSAAS SYSNASVKRE RDVGSEETTT EVERVSSRVI SDEDDDGSNA  120
RKKLRLTKAQ SALLEESFKI HSTLNPKQKQ DLARELNLRP RQVEVWFQNR RARTKLKQTE  180
VDCEFLKKCC ETLTEENRRL HKELHELKAL KIAQPLYMQL PAATLTMCPS CERIGGGVGE  240
NPSKNAFTIA QKPHFYSPFN NPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9989720.0EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363789.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-96HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM1BXI90.0M1BXI9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-88HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]