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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400036615 | ||||||||
Common Name | LOC102601513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 836aa MW: 91997 Da PI: 6.3799 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.3e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r +L +++ +++ +q+kvWFqNrR +ek+ PGSC0003DMP400036615 5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP | |||||||
2 | bZIP_1 | 22.1 | 3.3e-07 | 57 | 98 | 18 | 59 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+ l PGSC0003DMP400036615 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98 9*************************************9977 PP | |||||||
3 | START | 171 | 7.7e-54 | 155 | 361 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+++e++ ka+ ++ Wv++ +++g+e++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ ++l+vi +g PGSC0003DMP400036615 155 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGng 242 6899******************************************************.8888888888******************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++ p s+vRa++lpSg+li+p+++g+s +++v+h+dl+ PGSC0003DMP400036615 243 GTIELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLD 331 ************************************************9999999********************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 174 grlphwllrslvksglaegaktwvatlqrq 203 + +++++lr+l++s+ + ++k+++a++++ PGSC0003DMP400036615 332 ACSVPEVLRPLYESSKILAQKMTMAAFRYI 361 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.451 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-15 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.11E-16 | 5 | 65 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 5 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-15 | 5 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-18 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.09E-5 | 57 | 93 | No hit | No description |
PROSITE profile | PS50848 | 25.976 | 145 | 373 | IPR002913 | START domain |
CDD | cd08875 | 6.93E-70 | 149 | 365 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.1E-19 | 153 | 344 | IPR023393 | START-like domain |
SMART | SM00234 | 1.4E-50 | 154 | 364 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-51 | 155 | 362 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.0E-34 | 155 | 366 | No hit | No description |
Pfam | PF08670 | 8.0E-46 | 689 | 834 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence Send to blast |
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR 60 EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TQVNSTTTDT 120 CCESVVVSDQ QQQQNPIPQH HPQRDANSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM 180 KPGPESIGIV AVSRNCNGVA ARACGLVSLE PMKVAEILKD RPSWYRDCRC LDILNVIPTG 240 NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG GPVGPPATSS 300 VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY 360 IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG FIDDGWTIMG SDGVDDVTIA 420 VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA 480 YSSASLKASP YAVPCARPGV FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD 540 MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS DSPSAARTLD 600 LASTLEARTG GTRLAGEVEG RSYNHRSVLT IAFQFAFENH YRENVAAMAR QYVRSIVGSV 660 QRVAMAIAPS RLCSQLTPKS FPGSPEAVTL ARWICRSYKN HTGGELLQVE SQAAGDAVLK 720 QLWHHTDSIM CCSVKMNDSA VFSFSNQAGL DMLETTLIAL QDIMLDKILD EAGRKVLLSE 780 FPKIMQQGFA YLPAGLCVSS MGRPVSYEQA VAWKVLNDDN SSHCLAFMFT NWSFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400036615 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353018.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1 | ||||
Refseq | XP_006353019.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | M1BWB1 | 0.0 | M1BWB1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400054421 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400036615 |
Entrez Gene | 102601513 |