PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400036024
Common NameLOC102602161
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 288aa    MW: 32434.8 Da    PI: 7.7444
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400036024genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.1e-3263119259
           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                           + +rYkeClkNhAas+Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e e 
  PGSC0003DMP400036024  63 KMIRYKECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEIEG 119
                           5789*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-2965117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2565120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-3166117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36667116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.03E-18209276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-30211277IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELPSQDHED MPIPINSTYG HMIHHDPTPP NNTNHIIPPS MNGPPIDAPP VATAADHHVP  60
FKKMIRYKEC LKNHAASMGG NATDGCGEFM PSGEEGTIEA LICSACNCHR NFHRKEIEGD  120
QQLQLPSSCD CFHHLNNRGG STKKVYLGHN HHKTSLGPEP FGTIIPTRPI IPPHHQMIMS  180
YNMGSLPNSE SEEHDQDHHH IGGIMAMARP LHHVKKRFRT KFTQEQKDKM LNFAEKVGWK  240
IQKQEEGVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNDS IPNENQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242162731875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400036024
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349273.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLM1BUX10.0M1BUX1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000533970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-72homeobox protein 31
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]