PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035817
Common NameLOC102581335
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 278aa    MW: 31892.6 Da    PI: 6.5994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035817genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY696.8e-22115177159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                           ++Dg++WrKYGqK++ +s++pr YYrCt++   +C+++k+v+  +e+p k+ ++tY g+H+++
  PGSC0003DMP400035817 115 MNDGCAWRKYGQKKILNSKYPRCYYRCTHKydqECRATKQVQIIQENPiKMYHTTYFGNHTCN 177
                           58***************************99999********9998875899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-22104178IPR003657WRKY domain
SuperFamilySSF1182908.37E-22109178IPR003657WRKY domain
PROSITE profilePS5081116.237110179IPR003657WRKY domain
SMARTSM007748.1E-33115178IPR003657WRKY domain
PfamPF031063.6E-22116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEEFLGENPH KRLIKELVEG KIFAVQLQSL LKQPNESVLA DELIRKIWGS FTQAITELNS  60
LGNSDNSLTQ SQIEEVDQPN SGSGLKKKKK EKQDRRGCYK RRKTSGSWMR ESETMNDGCA  120
WRKYGQKKIL NSKYPRCYYR CTHKYDQECR ATKQVQIIQE NPIKMYHTTY FGNHTCNSTK  180
IPKHTYNSQF NHAMVKHSDS TVLKEEEEEE EESKGQSDNA SSIVDSNLWQ DFMPSSPSAH  240
DSTLTANYNA AYYEGVISSH DMEDLAKFGE IEAIEFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19113176668OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185102KKKKKEKQDRRGCYKRRK
287102KKKEKQDRRGCYKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035817
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0621820.0KM062182.1 Solanum habrochaites cultivar EC520061 WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356477.10.0PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ91e-180WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLM1BUF30.0M1BUF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-38WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]