 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400035733 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
LBD |
Protein Properties |
Length: 202aa MW: 21718.7 Da PI: 7.2687 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400035733 | genome | PGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 134.8 | 3.3e-42 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g+i++l+qq+++
PGSC0003DMP400035733 13 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGTISTLNQQVQS 101
7**************************************************************************************** PP
DUF260 90 lkaelallkee 100
l+ael+++++e
PGSC0003DMP400035733 102 LQAELNATRAE 112
******99987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MEPSCTKLNT SIPCAACKLL RRKCAEECPF SPYFSPHEPQ KFAAVHKVFG ASNVSKLLME 60 VPESQRADAA NSLVYEANVR LRDPIYGCMG TISTLNQQVQ SLQAELNATR AEILRYKYRE 120 ATNSLIIAST GIGATVAVAE LPQAPSTPTY PPRPPPPQDS FGVVIPSCSS PPSTHESVYA 180 TPSSGANFSV IPNNNIVPYF D*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975518 | 1e-173 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |