PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035596
Common NameLOC102592300
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 544aa    MW: 60626.9 Da    PI: 7.7892
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035596genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  PGSC0003DMP400035596  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                          ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-12446No hitNo description
CDDcd002022.99E-16655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.9E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.0E-9283370IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPCDFEEH  60
RVSRFKNISM KNKEAKILKR KQSHDNAEVG TPPDYNLGFR KVLDEDTSNR SSSGSAVSNS  120
ESCAQFGSAE ASDLTGPAQS NIWDSTVPSR KRTCFNRPKP SSVEKLTKDL YTILHEQQSS  180
YLSASSEEEL LFESDKPMVS VEIGHGSVLM RHPSTIGREE ESEASSLSVD NKHRSVSDAY  240
SRLTTPPVNI SKGVNSPNMG TERIKKPTGP AIEQDQIKRN KDHLEKLQIL GHHNSPLRYI  300
DLKDVLNYEE FTSHLSSDEQ QQLLKYLPPV DSFAPPDSLR SVFESSQFEE NLCSFQKLLA  360
EGVFDNSFSG VTLEDCRNLK RFILCYLTKS KWMQQYNLLK DKKCKNSSSG SEVAREPNVV  420
GTCYSANVKK PREGQYPKCS GAKTTMKSPK RVVMKSIYEQ KELVDNDGSC FSPRSSFALP  480
SENSSLVLDS FRSANENSHQ DLLLDVPSNS YCPQAELLLP TSSFTTQAST SSSSMYPPHF  540
VRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362478.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLM1BTZ40.0M1BTZ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000528000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-141GATA transcription factor 26
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]