PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035161
Common NameLOC107060331
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 200aa    MW: 22505 Da    PI: 7.8912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035161genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000435476123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C +C++ F ++  L  H++ H
  PGSC0003DMP400035161 54 FSCLYCSRKFCTSQALGGHQNAH 76
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-55181No hitNo description
PROSITE profilePS5015710.975481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MADHTHTHTH LVYDFWSQSN SVPPDIMLED HQLPMIPAAI PKPKPKVPSS SRMFSCLYCS  60
RKFCTSQALG GHQNAHKRER AASRRNMFST TPTDSHPNPN NNNNNMLRFH FLQNNNNDQD  120
MPQQQNIING NSPYNMSNYC CQLQAPPSNN NNFNPFCSSS SGFYPPPNHG YFTTTGDAPT  180
LSTPPVDERQ LNLDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154328e-49AC215432.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0257H21, complete sequence.
GenBankAC2156008e-49AC215600.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0098J01, complete sequence.
GenBankHG9755148e-49HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163595.11e-146PREDICTED: zinc finger protein KNUCKLES
TrEMBLM1BSW61e-145M1BSW6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000521701e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-15C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]