PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400035160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 65aa MW: 7739.61 Da PI: 5.4658 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.7 | 6.6e-11 | 5 | 57 | 42 | 94 |
TS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 42 sg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +g +W+++++y +++s++yvl+ ++ +Fv+ ++L++gD + ++++++++ +v PGSC0003DMP400035160 5 DGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHELRQGDYFALHYNDQKQ--IYV 57 55579*******888899999999.********************976433..355 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.727 | 1 | 63 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 4 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-8 | 6 | 57 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.94E-10 | 8 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MDDMDGIHVW SFRYRYWPNN SSRMYVLENT GDFVQTHELR QGDYFALHYN DQKQIYVSLL 60 FGVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-20 | 1 | 48 | 44 | 91 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-20 | 1 | 48 | 44 | 91 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400035160 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215600 | 2e-37 | AC215600.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0098J01, complete sequence. | |||
GenBank | HG975441 | 2e-37 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 2e-37 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231748.2 | 3e-35 | B3 domain-containing transcription factor FUS3 | ||||
Swissprot | A4LBC0 | 8e-19 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | M1BSW5 | 7e-41 | M1BSW5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052167 | 5e-35 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 5e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400035160 |
Publications ? help Back to Top | |||
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