PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035159
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 288aa    MW: 32658.5 Da    PI: 4.442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035159genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-1886176187
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+l +sdv++++r+v+pkk ae++    +   +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ ++L++gD + +
  PGSC0003DMP400035159  86 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHELRQGDYFAL 171
                           89**************************544..557788********9*********888899999999.******************9 PP

                           EE-SS CS
                    B3  83 kldgr 87 
                           +++++
  PGSC0003DMP400035159 172 HYNDQ 176
                           98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.91E-2184173No hitNo description
Gene3DG3DSA:2.40.330.106.8E-2484179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-2084179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1586188IPR003340B3 DNA binding domain
PfamPF023621.5E-1586176IPR003340B3 DNA binding domain
SMARTSM010191.6E-1386188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMEITEAYGV MADGNNIVVG DNNNNSMMNP PTPTPTPTPT KRSRSQRRRR SSLNFTSLDF  60
LSHVPPPPPP LPAARVLEPT GFRFLFDKQL QNSDVSSLRR IVVPKKAAER YLPALEIKEG  120
FPITMDDMDG IHVWSFRYRY WPNNSSRMYV LENTGDFVQT HELRQGDYFA LHYNDQKQIY  180
GIEARKAGSG AVFRGYEAED VILTDYAQAA DDGNGAIIMN EPEMDMSSFY FPAMDNEMGM  240
SFIYDTSFWN EPAFDFVGGP MTYYSTNVYP MPSFGSIEDS FSVDDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-46831892108B3 domain-containing transcription factor FUS3
6j9b_D4e-46831892108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-154HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231748.21e-170B3 domain-containing transcription factor FUS3
TrEMBLM1BSW40.0M1BSW4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000521670.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-54B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]