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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400034430 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
WRKY |
| Protein Properties |
Length: 225aa MW: 25455.5 Da PI: 7.1899 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400034430 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 65.3 | 9.9e-21 | 167 | 207 | 1 | 40 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkver 40
++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+
PGSC0003DMP400034430 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQL 207
58***************************99********95 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDP VLPIKDETGN LMEELNRVNA 60
ENKKLTEMLT VMCQNYNSLR SQLTEYLSKQ NSSTSGADQD QNSDGSKKRK VENNNNEIVK 120
SSVQLLNSDS SSSDEDSSPN KPREEHIKTK TSRVYMRTEP SDTSLIVKDG YQWRKYGQKV 180
TRDNPSPRAY FKCSFAPTCP VKKKVQLILI SSTILEPNVQ VYSF*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ654291 | 0.0 | FJ654291.1 Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang Y, et al.
Regulation of oncogene expression in T-DNA-transformed host plant cells.
PLoS Pathog., 2015. 11(1): p. e1004620
[PMID:25615824] - Geilen K,Böhmer M
Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
Sci Rep, 2015. 5: p. 13369
[PMID:26293691] - Geilen K,Böhmer M
Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
Plant Signal Behav, 2015. 10(11): p. e1106659
[PMID:26479147] - Van Aken O, et al.
Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
Plant Physiol., 2016. 171(3): p. 2150-65
[PMID:27208304] - Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
Plant Cell Physiol., 2016. 57(7): p. 1568-1582
[PMID:27328696] - Lu K, et al.
Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
J. Exp. Bot., 2016. 67(17): p. 5009-27
[PMID:27406784] - Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
Plant Cell, 2017. 29(1): p. 20-38
[PMID:28011690] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643] - Zhang S, et al.
The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
Plant Physiol., 2017. 173(4): p. 2294-2307
[PMID:28250067] - Cheng P, et al.
The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
Front Plant Sci, 2018. 9: p. 182
[PMID:29497438]
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