PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034429
Common NameLOC102590949
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 356aa    MW: 39757.1 Da    PI: 8.9916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034429genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66e-29167227160
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                           ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkk++rs ed+++++ tYegeHnh+k
  PGSC0003DMP400034429 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKLQRSVEDQSILVATYEGEHNHSK 227
                           58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27161227IPR003657WRKY domain
PROSITE profilePS5081124.466162228IPR003657WRKY domain
SuperFamilySSF1182901.03E-23164226IPR003657WRKY domain
SMARTSM007745.2E-32167227IPR003657WRKY domain
PfamPF031068.1E-23168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDP VLPIKDETGN LMEELNRVNA  60
ENKKLTEMLT VMCQNYNSLR SQLTEYLSKQ NSSTSGADQD QNSDGSKKRK VENNNNEIVK  120
SSVQLLNSDS SSSDEDSSPN KPREEHIKTK TSRVYMRTEP SDTSLIVKDG YQWRKYGQKV  180
TRDNPSPRAY FKCSFAPTCP VKKKLQRSVE DQSILVATYE GEHNHSKVDT VTTTSPSSRF  240
NPKNNVSGNY TASVMPSSTT NISRPKPMLT LDLAEPKTSQ NDVKKVNSNT SSASGHKRKS  300
PGNDHQQHQN RPEFQHFLIE QMASSLTKDP SFQAALAAAI SGKFLQNNNN NTIDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-181662251371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542910.0FJ654291.1 Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341684.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLM1BR790.0M1BR79_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000510470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-85WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]