PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033825
Common NameLOC102583727
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 452aa    MW: 48559.8 Da    PI: 6.6154
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033825genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.35.2e-16245300358
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  +++++ +
  PGSC0003DMP400033825 245 DTKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 300
                           679*****************************************999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-12242298No hitNo description
SMARTSM003383.1E-19243307IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.679245300IPR004827Basic-leucine zipper domain
PfamPF001701.4E-13246299IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-11247297No hitNo description
CDDcd147023.40E-6248299No hitNo description
PROSITE patternPS000360250265IPR004827Basic-leucine zipper domain
PfamPF124987.5E-49314440IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDRVFSVDDD IGDHFWSTPP TAELGVDSPT SAATAAISYS KMMNRSSSEW AFQRFLQEAA  60
GTTTSSPPLP PTMASSSSSS HQNDVVEIKD ENLSTPNLNS STALNSKPAA TSFASAPPQN  120
IPVDAEEYQA FLKNRLDLAC AAVALTRAKN LKPQDSSSIA PDKGPETASA SQSVSHISTK  180
GSGQEVRKVQ DKDSGGPVGI PSLPSVQKKP VVQVKSTTSG SSRELSDDDE AEGEAETTQG  240
TDPADTKRVR RMLSNRESAR RSRRRKQAHL TELETQVSQL RVENSSLLKR LTDISQKYNE  300
SAVDNRVLKA DVETLRAKVK MAEETVKRVT GLNPLFQAMS EMSSMAMPSF SGSPSDTSTD  360
TALPVQDDPQ HHYYQQPPNN HMPTHDPRIQ NGMVDVPPIG GSVQQNLAAA AVGGNKMGRT  420
ASMQRVASLE HLQKRIRGEV SSCGTQGRGE Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259266RRSRRRKQ
2261266SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0616480.0AY061648.1 Nicotiana tabacum bZIP transcription factor (BZI-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347748.10.0PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-149CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLM1BPR90.0M1BPR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000500960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-66bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]