![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400033688 | ||||||||
Common Name | LOC107062861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19568.3 Da PI: 5.797 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.3 | 3.5e-12 | 24 | 52 | 14 | 42 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 sk ++ ++KKA+E+S+LC++++a+ii+s PGSC0003DMP400033688 24 SKMQKALFKKANEISILCGIQIAIIILSI 52 788899********************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.002 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.975 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-12 | 13 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-9 | 24 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MESKNSNVDL ALAKDKRAEG GKISKMQKAL FKKANEISIL CGIQIAIIIL SIDRQPIVFG 60 KPDAESVIHQ FLEANHPTAP RFYMKMKKKE EENKEKGKSV EDNITHRQSE DYESPYLGSL 120 LKLYEGLTEF ENQLTKEIDL TKLNQEIEKN EDPKIAPEMN VASSSTLPTN FSP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400033688 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-160 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169511.1 | 1e-124 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1BPI5 | 1e-123 | M1BPI5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049904 | 1e-123 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400033688 |
Entrez Gene | 107062861 |
Publications ? help Back to Top | |||
---|---|---|---|
|