PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033409
Common NameLOC102605244
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 431aa    MW: 46694.4 Da    PI: 9.193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033409genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05197219223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C++Cg+ F  ++ L+ H  + H
  PGSC0003DMP400033409 197 TCHKCGEQFGKWEALEEHHLSkH 219
                           7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280198219IPR007087Zinc finger, C2H2
SuperFamilySSF563991.32E-21221429No hitNo description
Gene3DG3DSA:3.90.228.101.1E-8232426IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGEKKNMPAV WFSLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV  60
IHGSKRHLDK PPSCSPRSIG SSEFLNPITH EVILSNSRCE LKITSFNGFQ ESGNGGSGVG  120
GGVSTNGGST FVGTLRPGTP GPGGHPTMHY FNSGCRNTPT RRSASFLVDK EGHTSSFASK  180
TRYSLDNDVN GTSSGVTCHK CGEQFGKWEA LEEHHLSKHA VSELLEGDSS RKIVEIICRS  240
SWLKSESQVG RIERVLKVHN TQKTLARFEE YREMVKSKAS KLPKKHPRCI ADGNELLRFY  300
GTTLACGLGM NGSCCLCISD KCCVCRIIRN GFSTKKELKG GIGVFTTSTS GSAYECIEMS  360
EDDPSLRKAL IVCRVVAGRV HRPLENIQEM AGQTGFDSLA GKVGVYSNIE ELYLLNPKAL  420
LPCFVVICKA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5609000.0EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360102.10.0PREDICTED: uncharacterized protein LOC102605244
TrEMBLM1BNU50.0M1BNU5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-168C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]