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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400032125 |
Common Name | LOC102592364 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
MYB |
Protein Properties |
Length: 335aa MW: 38145.1 Da PI: 8.6403 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400032125 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++l+ + ++G g+W+ +++ g+ R++k+c++rw +yl
PGSC0003DMP400032125 14 KGPWTHEEDQKLLSFIDKHGCGSWRGLPAKAGLQRCGKSCRLRWINYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 46.6 | 8e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ +E+ +++++++lG++ W++Ia +++ Rt++++k++w++
PGSC0003DMP400032125 67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 110
89********************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MGRSKCCDEE GLKKGPWTHE EDQKLLSFID KHGCGSWRGL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPNG AGSSKYVANL SHMAEWESAR LEAEARLVRK SKILFNSHNY NINPTTISQQ 180 LPYYQQLPCL DILKAWQMTS TKLPTINDIS HAILLNNSRN KNLESSIPST LNSSENIFAN 240 NVPTTTKVGD DHQNLHNLST INSCFEDDQL QTELPTFMQE FSGVFPEYTQ NSTNGLQMDN 300 IMGSFYGDFE DNKLINWNNF PNYLVNSPIG SPVF*
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Functional Description ? help
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Source |
Description |
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC150162 | 0.0 | AC150162.1 Solanum demissum chromosome 5 clone PGEC160O2, complete sequence. |