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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400032103 |
Common Name | LOC102591369 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
MYB |
Protein Properties |
Length: 430aa MW: 47643.7 Da PI: 7.7734 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400032103 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 124 | 169 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++
PGSC0003DMP400032103 124 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 169
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 176 | 219 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+
PGSC0003DMP400032103 176 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 219
678*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPKSLDEGKG RRRGSWDFQF LNKGGSFFSS 60 QSLDEAQNSE ENNGTIDLNA SCFNEENPIT MHSTFNSNNN SSSSGCGGNN GKETENGQSK 120 LCARGHWRPA EDAKLKELVA IYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFS 180 EEEEERLMAA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRKMGQF 240 VYRRSTTTVV EEAENSSGQN SVNHFAGTCS MKMNNDGPNG WVVYGPNGSP HMAASAGEAA 300 ATPSSTNNVP LYSPYSPFCA PPFDSLPAGH CGNEMMNILN QQAGRSWDRQ REITHQHHQH 360 SSNSLMMMNS MQQDQSQYVL QFPYVAQISS SSTEQGLVKE DKRSNNNSDN TTIAPPTPPF 420 IDFLGVGAT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
GenBank | JX522478 | 0.0 | JX522478.1 Solanum lycopersicum R2R3 MYB gene, complete cds. |