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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400031943 |
| Common Name | LOC102589919 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
MYB |
| Protein Properties |
Length: 334aa MW: 38101.7 Da PI: 5.7065 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400031943 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.7 | 6.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+++++++G+g+W+t ++ g+ R++k+c++rw +yl
PGSC0003DMP400031943 14 KGPWTPEEDNKLIQYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ +E+e +++++ lG++ W++Ia++++ gRt++++k++w+++
PGSC0003DMP400031943 67 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGRSPCCDKN GLKKGPWTPE EDNKLIQYIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY 60
LRPDIKRGRF SFDEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG 120
IDPVTHSPRL DLLDLSSLLN STQFNLSSLL GLQALVNPEV FRLAATLLAS QNESTPELLL 180
QKYQENNQMF NTQVQNQEGS ELLLQKLQQN QILNSQLQNQ TQFFQFQNQI QEIPNFTTQN 240
VPCSSSLSQP MQLGHVEESY LMNGQMLPPQ NYGYCNSDAS DNSNFQSLNT NSSTQNFSLD 300
SVLSTPTEDE KESYCSNLMK FEIPESLNFD DFM*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
Biomolecules, 2019.
[PMID:29880735]
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