PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031375
Common NameLOC102606404
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 302aa    MW: 34056.8 Da    PI: 5.4468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031375genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.89.1e-23122182258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.EEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.vveitYegeHnh 58 
                           +Dgy+WrKYGqK++ g+++pr YYrC+ +   +C ++k v+rs+++++ ++e+ Y ++H +
  PGSC0003DMP400031375 122 EDGYSWRKYGQKNILGAKYPREYYRCARNrssNCAATKMVQRSETEESlAFEVSYGENHSC 182
                           7**************************98888***********98877258********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-23108184IPR003657WRKY domain
PROSITE profilePS5081117.649116180IPR003657WRKY domain
SuperFamilySSF1182908.89E-20118184IPR003657WRKY domain
SMARTSM007743.6E-28121184IPR003657WRKY domain
PfamPF031061.7E-22122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGENNCWERQ VVITELTKGK EFMLQLQKYI DPMKQDVCLQ YLAAEVLSSY DKALSLLNGS  60
TLSSMINIKA APSTAPRLES PQLPADNSAK SCDRPSISRK RKIVSRRREY VHARSGEEVP  120
PEDGYSWRKY GQKNILGAKY PREYYRCARN RSSNCAATKM VQRSETEESL AFEVSYGENH  180
SCGQEKKNKN KNEELVAVQQ TKCDHEIEIG AGEISEFNIH ELVSTPNNPF DSDFISTPAS  240
SPLPDTNYPH NDDSLTDPLF NHDVPDKSSV DDFISPYAEW DSHDAAVAYK LSFPHSYNKQ  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-141231801874Disease resistance protein RRS1
5w3x_D3e-141231801874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345567.20.0PREDICTED: probable WRKY transcription factor 41
TrEMBLM1BIZ30.0M1BIZ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000463510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-25WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]