PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030985
Common NameLOC102601114
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 715aa    MW: 79324.1 Da    PI: 4.4988
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030985genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12565606346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  PGSC0003DMP400030985 565 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 606
                           9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.7E-29556640No hitNo description
PROSITE profilePS5129310.79561612IPR017884SANT domain
SMARTSM007171.9E-9562610IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-10564613IPR009057Homeodomain-like
CDDcd001671.25E-7565606No hitNo description
Gene3DG3DSA:1.10.10.601.0E-6565606IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDLLDDIFAG GASKTVKAGG KFQPKAKPRS LKKGPAVASS SLTSKPTGDT VATDSSEALK  60
SGKNSQNCDE QSSVLAEPSL VHPLAAETLV PSVGSSLDAS MVITDNNENW KSCFEKSEGE  120
NADIYIGLDS FDDLLPHSSG IDPSAAHAAG AEKQQEQLLI PVSSVDGSAH SASNLQSDEV  180
AAGQDPLTFQ ASVLSVSGSC QMEMDTYSSL EADILGVTTI SGQSRRFQPK PKLQVYRERY  240
DTIIPDLDVG ESVSCLPDSH SVHSEMDFVD NGKEHGLPAA DVLDFSVRGF DNNIITESAH  300
EFPVHEEYVA EASLPDADIP AKHSEATSQM PEEPVPQRPK TKKQKFSASE LSAISEENGE  360
SRSLRSRRKS VNASRLVDEF DEDVIGDGEY VPEHPNDSVT IGNDEEFLVE NDSQGKKVQK  420
KSKKTVTKEG KRVRKSKKTA EASDQAANKK PKKFSHSTRQ KRRTVDKTLL EAPMDEIDYS  480
KVPIKDLILL AEHKERLAKK DAAVSQIPTT TDQSARASVS NYDEDETYAS DEDGEADDHS  540
KSTMAEDTSA YFNYQTYMDK TPSTRWSKQD TELFYEAVQQ FGTDLSLIQQ LFPGRTRRQL  600
KLKYKKEERQ NPFRLHDALT NRSKDHSHFE RVIERLKQIE AEELQYADKD ESIDLTGEEE  660
MGTQEIYEEE AKSEHVEEKE VETVEQDVPE MENPVKEYDD EDDFMKWSQY TSEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418437QKKSKKTVTKEGKRVRKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153680.0AC215368.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044O16, complete sequence.
GenBankAC2153790.0AC215379.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0075D08, complete sequence.
GenBankAC2154790.0AC215479.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0049G16, complete sequence.
GenBankGU0488950.0GU048895.1 Solanum lycopersicum clone BAC CaCM511O09-Tomato, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363192.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X2
TrEMBLM1BI380.0M1BI38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000457280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-50MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]