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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400030812 |
| Common Name | LOC102597667 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
HD-ZIP |
| Protein Properties |
Length: 302aa MW: 34666.4 Da PI: 4.6373 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400030812 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.5 | 4.6e-18 | 80 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k
PGSC0003DMP400030812 80 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 133
45578899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.2 | 5.9e-40 | 79 | 170 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+
PGSC0003DMP400030812 79 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDVLKASFDKLKADYDTLFKENEDLRN 167
69**************************************************************************************9 PP
HD-ZIP_I/II 90 elk 92
e++
PGSC0003DMP400030812 168 EVH 170
986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEVGRVINES SNTVLVPTEK LSHCLWMSNS SPSFHGSASM VNFEDVGRGE VTKERPFFPA 60
IDNEETSNDD YDSCYHQPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL ANELGLQPRQ 120
IAIWFQNRRA RYKTKVLEKD YDVLKASFDK LKADYDTLFK ENEDLRNEVH LLTQKLHRKE 180
KGKENSEQSV PISPIDTQEA QKTTTPIVVT SDVPSIPKLM CKQEDATSAK SDVIDSNSPH 240
YTDGNHSSNV FEQEPSDFSQ DEDDNLSKSF LCFPEIGDQI QANSCNLSFQ IEDQPCWFWQ 300
Y*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Arce AL,Chan RL
A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
Plant Physiol., 2017. 175(3): p. 1238-1253
[PMID:28956754]
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