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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400030577 |
| Common Name | LOC102593263 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
LSD |
| Protein Properties |
Length: 147aa MW: 15237.8 Da PI: 7.9177 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400030577 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.3 | 1.3e-13 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
PGSC0003DMP400030577 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
************************9 PP
|
| 2 | zf-LSD1 | 46.8 | 4.9e-15 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
PGSC0003DMP400030577 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
************************9 PP
|
| 3 | zf-LSD1 | 41.8 | 1.7e-13 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL+Y +GA+sV+Ca+C++V
PGSC0003DMP400030577 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
***********************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 147 aa
Download sequence Send
to blast |
MPVPLAPYPT PPTPFTPPAN AGTQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG 60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR 120
SVKCAVCNFV TSVGVSTSTA EQKFNS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010787 | 4e-59 | AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence. |
| GenBank | HG975447 | 4e-59 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
| GenBank | HG975520 | 4e-59 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
