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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400030430 | ||||||||
Common Name | LOC102580320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 45673.9 Da PI: 5.3296 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C++++ +lC +C ++H+ H++ PGSC0003DMP400030430 4 ICEYCGEQRSIVYCRSDSACLCLSCDRNIHSAnalsqrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++++++++ C + ++ lC++C H + H++ PGSC0003DMP400030430 46 LVCERCNSQPAIFRCVEERVSLCQNCDWMAHASsstcltHKR 87 68************************9999976777777776 PP | |||||||
3 | CCT | 58.9 | 1.8e-20 | 354 | 396 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a+lRYkeK+k+R+F+K++rY sRK++Ae R+RvKGrFvk PGSC0003DMP400030430 354 RSDAVLRYKEKKKKRQFDKRVRYVSRKTRAEVRKRVKGRFVKD 396 889**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.0E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.06E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.072 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00106 | 47 | 77 | No hit | No description |
SMART | SM00336 | 0.48 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.813 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.6E-15 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC 60 VEERVSLCQN CDWMAHASSS TCLTHKRQAL SCYTGCPSAV ELSTIWSFLL GDPSIRDLTC 120 EQGMGSMSIT DCQPGDSQHP QVKEKSQDMS SALDEANDLH NLVKSAPFMG SSMPSLDNEL 180 HNVELLVGST NLTWSKVRNS GTKGYDDPFS DDFNMDEVDL SIENYEELFG VSIDNRDRLF 240 KNEDIDDFFG TKDMSTAESS FQGVNAVEGS AVGKVNTVKS ACSNAASAES MMSCKTEPPT 300 LCFAMQQSSF SFSNLTGESN AGDNQDCGAS SMLSMGEPSW RPPCPESSMP STSRSDAVLR 360 YKEKKKKRQF DKRVRYVSRK TRAEVRKRVK GRFVKDGDAY DYDPLHQTRS Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400030430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357679.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
Refseq | XP_006357681.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
Refseq | XP_015169010.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
Swissprot | Q9LUA9 | 1e-122 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | M1BGT7 | 0.0 | M1BGT7_SOLTU; B-box zinc finger protein 7 | ||||
STRING | PGSC0003DMT400044878 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-110 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400030430 |
Entrez Gene | 102580320 |
Publications ? help Back to Top | |||
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