PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030027
Common NameLOC102604540
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 811aa    MW: 90978.8 Da    PI: 7.6968
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030027genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.7e-32554608358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e +
  PGSC0003DMP400030027 554 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 608
                           789*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141111.3E-741123IPR025558Domain of unknown function DUF4283
PfamPF141112.7E-10307391IPR025558Domain of unknown function DUF4283
PfamPF047707.0E-30555607IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.1E-30556607IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-22556608IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735557606IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MAAPQIDFNS ENQEPKSKIV YLNYRRMPAA IFRKKYWDWN SMVSVCKLTM VGNFFIPKPK  60
MTKIRVSFQA KLSLKGVVKI RSYDSYHVFL DFTAEEDYQS VLLKERVVVA GAIMEVFRWT  120
PEFHDQFREA FGVVELDNTK RDEHIGGGNE YGTEESDSVD CVPEVTNSDS EDRVASPIKC  180
ETSKLPSSVG ISCSGFSGLS SAPYRITGRI PSVTYENSTM CSTDLVPIRG TYLNHNNLKS  240
YSREWNYGSK PTSEAADLAC ETLSQPLYAL SIVERHENQK SRPPIKVQHS TYMGYPTVNF  300
PRSYGESLVS DYKLTLLGNF SYKRPKMKEI RADFKAQNPL NGQVKIRNCS SRQVLILFTN  360
EEDYYTVLYK KAFIVAGALM QISWSSPDFH HEVKQNIYPD FRLSDAKSVN WNTDPSKLHP  420
SINGLSAPAT DEKPMSLQVP AVSQCLSVPS IRPPLPLLAH SVSVAGRLCA DRLTTSGIYV  480
PQSYPKGILG SPIFGRNEQA GRGSTFPSPS QALDQSSLAQ QHNQLNSYKE PKMTVRIAQS  540
QPPSTTSVSD TTSSIRYREC LKNHAASMGG HALDGCGEFM PSGEEGTPGA LKCAACNCHQ  600
NFHRKEIDDY QQMDDVGSHS RFSQPRNNSS SGSIQNQSPI SLPTQQLQQY HHDYSNSCSP  660
RSLVDSLQPY TQPPSPTSGS VFSQQAWERI EPSSIRPSYS YEMVNHNTMQ NGKQREYSWS  720
DSSSNTSRSR DHPSIRNENW NFDMFKPLNN RTPDHIPLEF PAYPSRCQPQ TVFADEFPHL  780
DIINNLLHEE HGTGRTLMSN SGFQRLNNGS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354529.10.0PREDICTED: uncharacterized protein LOC102604540
TrEMBLM1BFX20.0M1BFX2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000442700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14101810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-25homeobox protein 33
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]