PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029410
Common NameLOC102580378
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 827aa    MW: 90148.8 Da    PI: 6.3033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029410genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.81.3e-1254488072374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ +sP+
  PGSC0003DMP400029410 448 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPMLYTQKMASAFQVFNGISPF 536
                           579*****************************************************************9888***************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           +kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg++fef 
  PGSC0003DMP400029410 537 IKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAERLGLHFEFL 621
                           ***********************************************************....************************** PP

                  GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalf
  PGSC0003DMP400029410 622 P-VADKVGNLDPEKLNVSKREAIAVHWLQ--HSLYDVTGSDSN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALF 702
                           *.7*************************9..999999999999....**********************.899**************** PP

                  GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                           dsl a +++eseer++vE++ll++ei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++s+gy++ e++g+
  PGSC0003DMP400029410 703 DSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGDAK-FNNWREKLQQSGFRCLSLAGNAAAQATLLLGMFPSHGYTLVEDNGT 790
                           ***********************************9777766.********************************************** PP

                  GRAS 358 lvlgWkdrpLvsvSaWr 374
                           l lgWkd  L+++SaWr
  PGSC0003DMP400029410 791 LKLGWKDLCLFTASAWR 807
                           ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.019421787IPR005202Transcription factor GRAS
PfamPF035144.4E-123448807IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAKALPVSGE NCTGVNVVGD SSGENLQATT SKELFHCENG KMVRKRAASD MEIQTGAGEE  60
HRYLRRPAII GGSHSQIGDL RVCGNSNFGH GMNSNTTTTM TTQVSNYSTM QMLPSSTNLC  120
GVTSRGGPGI DTGFSNSTPN LTYTDAITSH HQPQQGTQTQ NNNNSNNQSP SVCVFSGLPL  180
FPPDRNRQNS GLLLQQPPAA AAAVVSSPLT TGRIDSMEDS TSATAWIDSI IKDLINSSAQ  240
VSVPQLIQNV REIIHPCNPY LASLLEYRLR SLTSNNNGGA DQNDPMECWR RKESLPPQLA  300
GLQQAQNNAN LLQHNILSLP DSSNNQYLNW EIANAPVAPS LNQHQQLGGN NPTTTDLSFV  360
TLSPQVQQQQ QQESPHSRSH SQQQAAVDLE QQQKQQQSSS SLSPTSVADN SAKTKTSTPA  420
QPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF  480
GTSAQRVAAY FSEAMSARLL NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS  540
HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGTSMDAL  600
EATGKRLSDF AERLGLHFEF LPVADKVGNL DPEKLNVSKR EAIAVHWLQH SLYDVTGSDS  660
NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE  720
QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRCL SLAGNAAAQA TLLLGMFPSH  780
GYTLVEDNGT LKLGWKDLCL FTASAWRPNS LHAAPGSRHF SRPNMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04318103382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448830.0AC244883.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-25i14 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365320.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLM1BEH70.0M1BEH7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000433580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]