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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400029304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 164aa MW: 18616.7 Da PI: 7.0562 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.2 | 2e-34 | 25 | 82 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k PGSC0003DMP400029304 25 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 82 8****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-30 | 15 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.088 | 19 | 83 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-26 | 20 | 83 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-37 | 24 | 82 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 25 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MQNNNDQNNS GNQYNQSIRE QKRSDDGYNW RKYGQKQVKG SENPRSYYKC TYPNCPTKKK 60 VERSLDGQIT EIVYKGNHNH PKPQSTRRSS SSTASSAIQS YNTQTNEIPD HQSYGSNGQM 120 DSVATPENSS ISFGDDDHEH TSQKSSRSRG DDLDEEEPDS KRW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-18 | 8 | 83 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-18 | 8 | 83 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00299 | DAP | Transfer from AT2G38470 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400029304 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB192884 | 0.0 | AB192884.2 Solanum tuberosum PPS8 mRNA for double WRKY type transfactor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311944.1 | 7e-94 | probable WRKY transcription factor 25 | ||||
Swissprot | Q6IEQ7 | 2e-58 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | M1BE90 | 1e-115 | M1BE90_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BE93 | 1e-116 | M1BE93_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043204 | 4e-93 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 7e-42 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400029304 |
Publications ? help Back to Top | |||
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