PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400029302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 535aa MW: 59573.9 Da PI: 7.3982 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.4 | 1.5e-33 | 204 | 261 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k PGSC0003DMP400029302 204 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 261 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.8 | 2.3e-33 | 376 | 434 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+ PGSC0003DMP400029302 376 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASQDIRSVITTYEGKHNHD 434 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-29 | 194 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.088 | 198 | 262 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-26 | 199 | 262 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-37 | 203 | 261 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 204 | 260 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-37 | 361 | 436 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-29 | 368 | 436 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.629 | 371 | 436 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-38 | 376 | 435 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 377 | 434 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MAASSFSFPT SSSSFMTTSF TDLLASDDYP TKGLGDRIAE RTGSGVPKFK SLPPPSLPLS 60 PPPFSPSSYF AIPPGLSPTE LLDSPVLLSS SNLLPSPTTG SFPSHAFNWK SSSHRDVKQE 120 DKNYSDFSFQ PQVGTAASIS QSQTNHVPLG QQAWNYQEPT KQNDQNANGR SEFNTLQSFM 180 QNNNDQNNSG NQYNQSIREQ KRSDDGYNWR KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV 240 ERSLDGQITE IVYKGNHNHP KPQSTRRSSS STASSAIQSY NTQTNEIPDH QSYGSNGQMD 300 SVATPENSSI SFGDDDHEHT SQKSSRSRGD DLDEEEPDSK RWKRENESEG LSALGGSRTV 360 REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTSTGCPVR KHVERASQDI 420 RSVITTYEGK HNHDVPAARG SGNHSINRPM APTVRPTVTS HQSNYQVPLQ SIRPQQSEMG 480 APYTLEMLQR PNNYGISGYA NSGDSYENQV QDNNVFSRTK DEPRDDMFME SLLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-36 | 187 | 437 | 1 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-36 | 187 | 437 | 1 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00299 | DAP | Transfer from AT2G38470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400029302 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB445390 | 0.0 | AB445390.1 Solanum tuberosum StWRKY8 mRNA for double WRKY type transfactor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274836.1 | 0.0 | double WRKY type transfactor | ||||
Swissprot | Q6IEQ7 | 1e-140 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | M1BE91 | 0.0 | M1BE91_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043204 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2286 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-111 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400029302 |
Publications ? help Back to Top | |||
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