PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TALE

Protein Properties

Length: 344aa MW: 38698.7 Da PI: 5.8406

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400029225	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	273	305	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++++ LA+++gL+++q+ +WF N+R ++ PGSC0003DMP400029225 273 PYPSESQKLALAESTGLDQKQINNWFINQRKRH 305 8*****************************885 PP
2	ELK	41.2	3.4e-14	225	246	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ PGSC0003DMP400029225 225 ELKGQLLRKYSGYLGSLKQEFM 246 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.7E-20	84	128	IPR005540	KNOX1
Pfam	PF03790	1.9E-22	86	125	IPR005540	KNOX1
SMART	SM01256	5.8E-26	135	186	IPR005541	KNOX2
Pfam	PF03791	2.5E-21	139	185	IPR005541	KNOX2
SMART	SM01188	2.8E-8	225	246	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	225	245	IPR005539	ELK domain
Pfam	PF03789	5.6E-11	225	246	IPR005539	ELK domain
PROSITE profile	PS50071	12.827	245	308	IPR001356	Homeobox domain
SMART	SM00389	1.3E-11	247	312	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-19	247	322	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-27	250	310	IPR009057	Homeodomain-like
CDD	cd00086	3.28E-12	257	309	No hit	No description
Pfam	PF05920	1.4E-17	265	304	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	283	306	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEGGNTNTSC LMMMGYGDHE NNNNGNGNAS LCAPQMMMMM PPPPPSLTNN NNAETSNNNN 60 ILFLPFMDTN NNNPQEDNNS SSSSSIKSKI MAHPHYPRLL AAYLSCQKIG APPEVVARLE 120 EICATSATMG RNSSSGGIIG EDPALDQFME AYCEMLTKYE QELSKPFKEA MVFLSRIECQ 180 FKALTLAPNS SHESALGEAM DRNGSSDEEV DVNNSFIDPQ AEDRELKGQL LRKYSGYLGS 240 LKQEFMKKRK KGKLPKEARQ QLVDWWLRHI KWPYPSESQK LALAESTGLD QKQINNWFIN 300 QRKRHWKPSE DMQFVVMDAA HPHYYMDNVL ANHFPMDMTP SLL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEGGNTNTSC LMMMGYGDHE NNNNGNGNAS LCAPQMMMMM PPPPPSLTNN NNAETSNNNN  60
ILFLPFMDTN NNNPQEDNNS SSSSSIKSKI MAHPHYPRLL AAYLSCQKIG APPEVVARLE  120
EICATSATMG RNSSSGGIIG EDPALDQFME AYCEMLTKYE QELSKPFKEA MVFLSRIECQ  180
FKALTLAPNS SHESALGEAM DRNGSSDEEV DVNNSFIDPQ AEDRELKGQL LRKYSGYLGS  240
LKQEFMKKRK KGKLPKEARQ QLVDWWLRHI KWPYPSESQK LALAESTGLD QKQINNWFIN  300
QRKRHWKPSE DMQFVVMDAA HPHYYMDNVL ANHFPMDMTP SLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	249	LKQEFMKKRK
2	246	250	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.

Function -- GeneRIF ? help Back to Top
regulation, overexpression, and role in controlling diverse developmental processes [PMID: 27217546]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400029225

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ477687	0.0	KJ477687.1 Solanum tuberosum class I knox protein (POTH15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001278851.1	0.0	homeobox protein knotted-1-like LET6-like
Swissprot	O22299	0.0	LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBL	M1BE18	0.0	M1BE18_SOLTU; Class I knox protein
STRING	PGSC0003DMT400043083	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6835	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-131	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400029225
Entrez Gene	102581859

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mahajan AS, et al. Regulation, overexpression, and target gene identification of Potato Homeobox 15 (POTH15) - a class-I KNOX gene in potato. J. Exp. Bot., 2016. 67(14): p. 4255-72 [PMID:27217546]