PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400029125

Common Name

LOC102581906

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 325aa MW: 36013.1 Da PI: 6.8752

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400029125	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	133	188	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe+kv++L+ae ++L +l + l+ PGSC0003DMP400029125 133 KRAKRILANRQSAARSKERKARYISELERKVQTLQAESTTLSTQLTLSQRDTTGLT 188 9****************************************998877766665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-16	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.553	131	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-10	133	184	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-7	133	177	No hit	No description
Pfam	PF00170	1.1E-8	133	182	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.49E-22	134	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQDPSNPNSI KLPTTTSFSA AFRPSHHRRA HSEVNFRLPE DLDLVSDPFD APARSFEEIG 60 SEDDFFSTYM DIEKLAGGSN PTDIDVAADG EKGPRHRHSN SVDSSSLLMT ESIEAKKAMA 120 PNKLAELWTI DPKRAKRILA NRQSAARSKE RKARYISELE RKVQTLQAES TTLSTQLTLS 180 QRDTTGLTNE NTELKLRLQA MEQQAQLRDA LNEALKQEVE RLKIATGQIS ASSDAYNPGM 240 QQIQYNRPAF FPHQNIQMPQ FHHLQGSMSN PRHPLLSGNA QALADAMQQD PLGRFQGLDI 300 SSRGSHRVKS EAPSISASES SSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400029125

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-104	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006358750.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-105	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M1BDU8	0.0	M1BDU8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400042946	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-90	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400029125
Entrez Gene	102581906

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]