PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027883
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 885aa    MW: 97856.8 Da    PI: 6.3566
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027883genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24130231199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F 
  PGSC0003DMP400027883 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI 217
                           99*****************************97677775.9************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             ++++ +l+++++r+
  PGSC0003DMP400027883 218 --WNENNQLLLGIRRA 231
                           ..7888889****997 PP
2Auxin_resp89.65.6e-30256330183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss r+         dldpvrWpnS+Wrs+k
  PGSC0003DMP400027883 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRS---------DLDPVRWPNSHWRSVK 330
                           79*********************************9789******************99.........99***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-44123245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-23129230No hitNo description
PROSITE profilePS5086313.042130232IPR003340B3 DNA binding domain
PfamPF023621.1E-22130231IPR003340B3 DNA binding domain
SMARTSM010194.3E-25130232IPR003340B3 DNA binding domain
PfamPF065071.8E-24256330IPR010525Auxin response factor
SuperFamilySSF542772.26E-6743822No hitNo description
PROSITE profilePS5174523.145748833IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MRVSSSGFNP QQEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSPQEQK DVCLLPAELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR  300
FRMLFETEES SVRSDLDPVR WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP  360
SPFSLRLKRP WPSGLPSLPG FPNGDMTMNS PLSWLRGDMG DQGMQSLNFQ GFGVTPFMQP  420
RMDASMLGLQ PDILQTMAAL DPSKLANQSL MQFQHSIPNS SAPLSQSQML QPSHSQQNLI  480
QGFSENHLIS QAQMLQQQLQ RRQNFNDQQQ LLQPQLQRHQ EVNSQFQHQQ QTKTISGLSQ  540
MASATHPHLS HLQVLSSTGS PQTFSDILGN HVNASSNSNM QSLLSSFSCD GASTVLNVHE  600
THPLVSSSSS SKRIALESQL PSRVTPFVVS QPEDVIAHNT KVSDLSSLLP PFPSRESFSD  660
YRGVEDSQSN ALYGFTDSLN ILQTGMSNMK GSSGDNGSLS IPYATSTFTS TVGNEYPLNS  720
DMTASSCVDE SGFLQSSENG DQANPTNRIF VKVQKSGSFG RSLDISKFSS YHELRSELAR  780
MFGLEGLLED PERSGWQLVI VDRENDVLLL GDDPWQEFVN NVWYIKILSP HEVQQMGKEG  840
LDLPNGVQAQ TQTLPGNVNG CDDYMNQKGS RNTMNGIPLG SLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1521235141388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357892.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
TrEMBLM1BAY60.0M1BAY6_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]