PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027705
Common NameLOC102605991
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 684aa    MW: 76310.7 Da    PI: 7.688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027705genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-067697223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          kC++C++ F ++ n++rH+r+H
  PGSC0003DMP400027705 76 KCEKCSREFYSPINYRRHMRLH 97
                          7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6197597IPR007087Zinc finger, C2H2
SMARTSM003550.00557597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MPVAKLSIGA TPAAMKADEG NDPLDTLIRQ AIGKEPLFSF SRTGDGPVQW IQLLNGLEQQ  60
DNAGGWPMLT PAKYQKCEKC SREFYSPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSLDDIKEVV SLHDVSIKDI SGSSLVQDLA TSMRKPAVWT LPQDYYKAGL ALLDLIQGIP  180
SKFNSRELFS ILDDASERTF LCAGTAESLQ KYVFDGDASK KGPELKNLVA CTSFLFEQKL  240
VKAWFADKDA EALRCQKLLF EEEEAAQKKQ AELLERKKQK KLRQKEQRER EQSNWERGDL  300
EVPMAESSIL SAAVSDSNSS TPEVSDDTSS CLELVQFSNN EAIDIEAQLN LSNQQHLDLV  360
EIQDVEPQPV SAQSRRHFPH TQWQVPKSQR MGRNGSHNNQ NHQVQKLEPV QKHGVFKDRG  420
TPVNSSKIWT KKIRVLNGER FRPEPQKEAI DQNQSNCEVM IGSISVPMKN CSTPGLGNCP  480
AVERDNFDST EPAMTKKCNL AVKPAKQDAL QGGSNGAAVK LWRPVSRHGS GQHPEEAVIS  540
EKLDNQISST ENCLQSCSMD NPIGKSKNYT YQVDGNVHQG LGFCSTSAKA FLSQRWKEAI  600
SGDHVTLVLS NDTEVYGHPD AQNSSSEAAP TSDDQEHGVL VKADNQQTNT GVSNLSSRGN  660
SKLKFRQKPD KSIKTRYIPK QKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274281ERKKQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353878.10.0PREDICTED: uncharacterized protein LOC102605991
TrEMBLM1BAI60.0M1BAI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000408430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]