PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400027662 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29073.3 Da PI: 9.3126 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.8e-18 | 167 | 251 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k l++s+v++ ++ lp +f+++h +++++ ++le+e+g+++e+k+i +k++ l++GW++++ a++L egD++vF+l++ ++ PGSC0003DMP400027662 167 FMKLLVRSHVGSCFWMGLPVPFCKNHL--PRKDTLVILESETGEEYEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVEPTR 249 899********************8884..357789***************777777....***********************987666 PP E. CS B3 90 fe 91 f+ PGSC0003DMP400027662 250 FK 251 63 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-19 | 162 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 162 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.85E-25 | 165 | 254 | No hit | No description |
SMART | SM01019 | 1.3E-18 | 167 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 167 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 167 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MKIKVVHRSE PPNQERVSVS YPDMPKKEVF DEEQENQQLG TQEPEPEPDS AIPKLGNDNL 60 SLVDASIPID SLTPSTQTPI SSLLGKRRRK PKEMIDQIST IPFRKKRVFK KQSQSSNGVA 120 DAGRKSISTK LERATADGSG NATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF 180 WMGLPVPFCK NHLPRKDTLV ILESETGEEY EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL 240 VFQLVEPTRF KVTLPNFFS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 87 | 106 | RRKPKEMIDQISTIPFRKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400027662 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-127 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339907.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | M1BAF0 | 0.0 | M1BAF0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040786 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-35 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400027662 |
Publications ? help Back to Top | |||
---|---|---|---|
|