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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400027651 |
Common Name | LOC102599422 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
MYB |
Protein Properties |
Length: 408aa MW: 46054.3 Da PI: 7.6226 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400027651 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l++ ++++G g+W+++++ + R++k+c++rw +yl
PGSC0003DMP400027651 13 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60
678*******************************************97 PP
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2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+
PGSC0003DMP400027651 66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108
899*******************.*********.*********998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001944 | Biological Process | vasculature development |
GO:0009733 | Biological Process | response to auxin |
GO:0010089 | Biological Process | xylem development |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010214 | Biological Process | seed coat development |
GO:0048364 | Biological Process | root development |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MGRPCCYKQK LRKGLWSPEE DEKLINHITK YGHGCWSSVP KLAALQRCGK SCRLRWINYL 60 RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI 120 DPDTHNKLLS VVENEEKVSA ISMNIEKASE GSSELNFVES HENSNYGIQT DKPKSSLVTM 180 TMDGYPSNTT TSAAPLTHEF FLERFVTTHE TSTASCNKPL ELASYLSFRQ LNYGSNIGLS 240 MNSNTNNLLF NSKNSEMFTH QFNSTITNDN ILTSPIAAVA SNDSMRNGNS TSIELQRNSS 300 FFDSNAFSWG TADYDKSEKE ANIHPSVTDP EDIKWFEYLH TQLLPGNAIT NNQITQDLYS 360 EKSSIQFTTQ GSLSTWLQNH QQQPSLQTAN IYNKHSQRIP DAFGQFS*
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