PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027535
Common NameLOC107058216
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 413aa    MW: 45538.8 Da    PI: 5.6626
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027535genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.51e-06166227162
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           ek+ k+  ++++ R+ ++ +R ++k ++eeLe+ v  + +  ++L   +++l+ e a+lks+
  PGSC0003DMP400027535 166 EKDEKKKSKLERGRVNSQLYRDKRKHYVEELEDNVRIMNSTIQELNRMISHLTLENATLKSQ 227
                           78999*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.9E-10162228No hitNo description
SMARTSM003382.4E-6166230IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.47E-6170228No hitNo description
SuperFamilySSF549282.15E-27319410IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3304.1E-25327410IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.745331409IPR000504RNA recognition motif domain
SMARTSM003604.6E-24332405IPR000504RNA recognition motif domain
CDDcd124086.46E-40332407No hitNo description
PfamPF000764.0E-19333399IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006413Biological Processtranslational initiation
GO:0005737Cellular Componentcytoplasm
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MENSHKPLEN DSSGVPIPPP DNGINNDSNV ESAAHKDEVM LDDVETEIDL SIDDVFPPPD  60
VEYLNVSPES SNHKASMESV NGYKGLNDSK NLNCPSSEYQ GSGICGMNNL VTSSPNVVNN  120
SMECGVVEQK IRLEDLKRKN VSDDSNNVFK YEKSDFVVDG SNVSSEKDEK KKSKLERGRV  180
NSQLYRDKRK HYVEELEDNV RIMNSTIQEL NRMISHLTLE NATLKSQMGS TGVPSQIPPP  240
PGMNLHHPIR SPWMFGAPPY MARPQESQAA HLVIKPIPRK PQAVAPPTSR EAPAAGAGYQ  300
KSAYVPPIMR GGASASGSGE GTEMRRRNDE NSVRVTNLSE NTREADLLEL FCPFGHVSRV  360
YVAIDQNTGM SRGSGFVNFV NREDAERAIN KLNGYCYHNL ILRVEWAAPR AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cq0_A1e-25318409394Eukaryotic translation initiation factor 3 subunit 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027535
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159138.10.0PREDICTED: bZIP transcription factor 17-like
TrEMBLM1BA490.0M1BA49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000406060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1861444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-19bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]