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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027172 | ||||||||
Common Name | LOC102604842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 249aa MW: 27394.6 Da PI: 7.7057 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.3e-20 | 138 | 172 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ PGSC0003DMP400027172 138 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 172 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.4E-19 | 132 | 187 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.89 | 132 | 168 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-14 | 135 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.4E-17 | 136 | 172 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.75E-12 | 137 | 169 | No hit | No description |
Pfam | PF00320 | 5.6E-18 | 138 | 172 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 138 | 163 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MNSCGNAYCH GGPCSCNLYY GHENNAYSMF YSTHHEYQKD ENYSENMYSF ASSPSSSSSS 60 VDCTLSLGTP STRLSTTNDE KRVHDEQRRS SSSYMSKCWN ILQNKNHTSS THHHKSGRGS 120 NNVNSGSNNA DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASAAAAA 180 NGNAGGIGME SSTQHTINGS WAHNSQGQKM PCYTSAYGNH EFRFIEDHDD RDSDNAISFW 240 PFLASQHC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027172 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-112 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346995.1 | 0.0 | PREDICTED: GATA transcription factor 19 | ||||
TrEMBL | M1B993 | 0.0 | M1B993_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040074 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 1e-34 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027172 |
Entrez Gene | 102604842 |
Publications ? help Back to Top | |||
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