PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027095
Common NameLOC102592750
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 89aa    MW: 10277.6 Da    PI: 9.5855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027095genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10347345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT+   +++ +a +++ ++   +W+ Iar++g g++++++k ++ 
  PGSC0003DMP400027095  3 NWTKNQNKKFEEALALFDKDtpdRWHNIARCVG-GKSAEEVKRHYE 47
                          7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129312.152154IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.5E-5255IPR009057Homeodomain-like
SuperFamilySSF466892.61E-13357IPR009057Homeodomain-like
PfamPF002491.4E-7347IPR001005SANT/Myb domain
CDDcd001674.22E-7350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MANWTKNQNK KFEEALALFD KDTPDRWHNI ARCVGGKSAE EVKRHYELLV KDVMKIENDQ  60
VPLPNYRGAS SNGRSYANEQ RLMQNLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-274881192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-116HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-116HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342582.13e-61PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM1B9297e-60M1B929_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000399741e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-36RAD-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]