PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39801.5 Da PI: 8.6925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.1e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+d PGSC0003DMP400026903 14 LPPGFRFYPTDEELLVQYLCKKVAGHDFPL-QIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD 101 79****************************.89***************988899*********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl PGSC0003DMP400026903 102 KIITS-QGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139 *9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-65 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.395 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP 60 SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSQGRK VGIKKALVFY 120 VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE 180 YSHGSSTSSS SQFDDMLESL PEMDDRFSNL PRLNSLKTEK LNLERLDSAN FDWAILAGLK 240 PMPELHPANQ ASGVQGQAQG NVNNHIHNHN NNNMNFLNDV YAHPTTNFRG NTKVESINLD 300 EEVESGNRNQ RIDQSSYFQQ SLNGFSQAYT NSVDQFGIQC PNQTLNLGFR Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026903 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY704177 | 0.0 | AY704177.1 Solanum tuberosum jasmonic acid 2 mRNA, complete cds. | |||
GenBank | HM749651 | 0.0 | HM749651.1 Solanum tuberosum cultivar Superior RSI5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233972.1 | 0.0 | jasmonic acid 2 | ||||
Swissprot | Q9SQL0 | 0.0 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | M1B8M1 | 0.0 | M1B8M1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039670 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-124 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026903 |
Publications ? help Back to Top | |||
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