PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026641
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 159aa    MW: 18234.7 Da    PI: 8.0749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026641genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00033962123
                          EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                          ++C++C ksF+    L +H  + H
  PGSC0003DMP400026641 39 WRCGYCRKSFRAEKFLDQHFDNrH 62
                          58**********999999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6213964IPR007087Zinc finger, C2H2
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPFVEKEKYE LPRQCRLHPS NDLFRDQEEH KIHLDVNEWR CGYCRKSFRA EKFLDQHFDN  60
RHSNLLDVGH SKCLADVCGA LHCDLVMEIK SKKTKCNPAA AARNRHLCEG LADKCFPANQ  120
SPSSTHLHEL FLRQFCDAHT CSGGGKPFSR GGKVWFDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144300.0BT014430.1 Lycopersicon esculentum clone 133748R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351467.11e-112PREDICTED: uncharacterized protein LOC102583214
TrEMBLM1B8081e-116M1B808_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392661e-117(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.19e-80C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]