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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026520 | ||||||||
Common Name | LOC102579681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 414aa MW: 46157.6 Da PI: 4.9643 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.5e-31 | 199 | 257 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ PGSC0003DMP400026520 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 257 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.787 | 193 | 259 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.9E-31 | 195 | 259 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-26 | 197 | 259 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 198 | 258 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-26 | 200 | 257 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MENNNYQGDL ADIFRGGNNT TSGESSSTNN TVIPIPTLIS DGWQFPYSAS QIEQPTSVQD 60 FGDPFCNLRD PLFHDLDMLQ AAASEDNIIN NNNNNESTNS VFGDSSPSMR KRGNMFSRML 120 QISPTNKLAM SACVVQNNVI GNHDDINSSK TCLMENSALQ ISSPRNTGIK RRKSQAKKVV 180 CIPAAAPANS RQGGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR 240 TDPNMLVITY TSEHNHPWPT QRNALAGSTR SQPNNSKHTN NTIIPNNPQS QTDTDEQKET 300 TNNISEYPKV KEEVAEEDVR HNHQLVEMRD DEEFSKDSYQ PIMLPDSSNQ CHEDFFADLI 360 ELEADPLNLL FAKTLSGDIN ELGQKKDIES FNMYDWSKDG NTTTSNNNNN PDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-25 | 173 | 260 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-25 | 173 | 260 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026520 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359101.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 | ||||
TrEMBL | M1B7Q5 | 0.0 | M1B7Q5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039061 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6701 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-81 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026520 |
Entrez Gene | 102579681 |
Publications ? help Back to Top | |||
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