PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025624
Common NameLOC102606392
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 254aa    MW: 27918.5 Da    PI: 5.3948
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025624genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.88.4e-294106198
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C l+p +     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ +++
  PGSC0003DMP400025624   4 SCNGCRVLRKGCSENCSLRPSLqwiksPDSQANATVFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIINPVNGSVGLMCSGN 92 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallk 98 
                           +q +q ++e +l +
  PGSC0003DMP400025624  93 WQRCQDAVESVLKG 106
                           *****999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3693109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPDH  60
LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINNDDDD  120
NNNNNTDQIV PLKGCDIRHV SKNNSDNQQV IKTRNGRLKR KGTFDSVASA SAEAEAAEEY  180
LLKNQPPLKF SITGWDQFEE IDDELIKRAA SHDSFSVETV EPTLLVNRVD PVKLEEDGDH  240
VGLELTLGLM SPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344137.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM1B5R60.0M1B5R6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-70LOB domain-containing protein 41
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]