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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 211aa MW: 23785.3 Da PI: 8.3658 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 110 | 205 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + p v+++ +l +p +f++++ ++ e++ + l+ ++grsW+ kl ++ + + ++GW++Fv +n+Lke D++vF+l++ e PGSC0003DMP400025606 110 TVSMQPTCVSRKFQLDIPVEFFKKCLNE--EETIVNLRVSNGRSWRAKLLDIQSNCPKMESSGWRDFVLDNNLKEHDTCVFELIDGIEP 196 556777789999*************544..4458***************65555555899***********************988555 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 l v++fr+ PGSC0003DMP400025606 197 MLDVTIFRA 205 588888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-22 | 106 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 106 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.57E-23 | 107 | 204 | No hit | No description |
Pfam | PF02362 | 1.3E-16 | 109 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-17 | 109 | 206 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.31 | 109 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MHNKTPKNKV VADSPYCIRQ NLGLPASSPS YQPVRVKLEK PDNLFCAAEK VKGRETNNVK 60 LDTGDLEGNL IAASYKGKDS TASEMTVLGK KKMLPSEKHN RDMYFNPHFT VSMQPTCVSR 120 KFQLDIPVEF FKKCLNEEET IVNLRVSNGR SWRAKLLDIQ SNCPKMESSG WRDFVLDNNL 180 KEHDTCVFEL IDGIEPMLDV TIFRATTPVS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025606 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-116 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350377.1 | 1e-152 | PREDICTED: uncharacterized protein LOC102594229 | ||||
TrEMBL | M1B5P8 | 1e-156 | M1B5P8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037688 | 1e-151 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-12 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025606 |
Publications ? help Back to Top | |||
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